FastQCFastQC Report
Wed 31 May 2023
EGAF00007959137

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959137
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430481
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33600.7805222530146511No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22780.5291755036807664No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9700.22532934090006293No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9090.21115914523521362No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8810.20465479312675822No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7500.17422371719077034No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7360.17097154113654262No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6510.15122618652158865No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5980.13891437717344088No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.12869325243158233No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5340.12404728663982847No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5180.12033051400642539No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4980.1156845482146715No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4620.10732180978951453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)