FastQCFastQC Report
Wed 31 May 2023
EGAF00007959138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433823
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10140.23373587845734323No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9000.20745788028758272No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8830.20353923143770616No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8530.1966239687614534No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8090.18648158350294936No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7160.1650442692065658No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7010.16158663786843944No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6770.15605442772743722No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6440.1484476387835592No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5650.13023744706942694No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5310.12240014936967382No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4810.11087471157591922No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4720.10880013277304339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)