FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences427927
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54061.2632995814706716No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12610.29467642845625536No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8290.1937246306028832No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7110.1661498339670084No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5640.13179818053079148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4990.116608673909335No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4770.11146761012976512No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4390.10258759087414442No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4370.10212022143963807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)