FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959145

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959145
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437382
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37820.8646903622005477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27260.6232538147431765No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14040.321000864233096No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12470.28510546844634665No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11390.26041309427457004No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11220.25652633167345706No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG10740.24555194315266748No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10110.23114805821913112No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7970.18222057606394412No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7780.1778765472744649No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7570.17307525229661944No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7340.16781669113040773No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7210.16484446090602722No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7190.164387194717661No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7080.16187223068164672No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6890.15752820189216749No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.15272690691432203No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.14701107955974413No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6110.1396948205458844No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6020.13763712269823633No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5610.12826316583672853No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5210.11911784206940386No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5170.1182033096926714No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5100.11660287803338958No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5060.1156883456566571No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4710.10768618736024801No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4670.10677165498351555No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4550.10402805785331816No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4390.10036992834638828No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)