FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465688
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28980.6223050626170312No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15790.3390682173472368No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14030.3012746731717373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13340.2864578859665699No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11830.25403274295236294No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG11360.243940148769133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11060.23749806737558193No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8770.18832351273814227No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8650.18574668018072185No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8520.18295511157684974No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG8510.18274037553039804No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8340.1790898627407191No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7680.1649172836749068No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7430.15954888251361427No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7140.15332153716651492No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7120.15289206507361153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7030.1509594406555462No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6740.14473209530844686No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG6520.14000790228650942No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.139578430193606No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6240.13399529298586177No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5750.1234732267097284No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5540.11896376973424268No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5420.11638693717682225No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC5320.11423957671230524No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5300.11381010461940183No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5030.1080122313652059No Hit
ATGGGTGCACAGGTTTCCACTCAGAAATCTG4900.10522066276133375No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4900.10522066276133375No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4870.10457645462197866No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4780.10264383020391335No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4750.10199962206455826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)