FastQCFastQC Report
Sun 21 May 2023
EGAF00007959149

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959149
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439555
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37850.8610981560896815No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28050.6381453970492884No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14410.32783155691551685No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12980.2952986543208472No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12360.28119347976931214No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10850.2468405546518638No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG10260.23341788854637077No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10260.23341788854637077No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8290.1885998339229448No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8290.1885998339229448No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7940.1806372353857879No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7480.17017210587981027No Hit
CCGCCGCGCACCCCTACCTGGGAATCCCCGG7300.16607705520355814No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7200.16380202705008473No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6790.1544744116208438No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6770.15401940599014913No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6760.1537919031748018No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6670.15174437783667574No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.14560180182229757No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5450.12398903436430025No Hit
GCAAGCGAACCGGAGGACAAATCTCCGCGCG5390.12262401747221623No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5290.12034898931874281No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5220.11875646961131144No Hit
GAACCGGAAGACAAATCCCCGCGTGTTCAGC5210.11852896679596409No Hit
CCGCCGCGCACTCCAACCTGGGAATCTCCGG4750.10806383728998648No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC4680.10647131758255508No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA4650.10578880913651306No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4630.10533380350581838No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4570.10396878661373433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4570.10396878661373433No Hit
ATGGGTGCACAGGTTTCCACTCAGAAATCTG4540.10328627816769233No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4520.10283127253699766No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)