FastQCFastQC Report
Sun 21 May 2023
EGAF00007959151

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959151
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448442
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26350.5875899224425901No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18590.4145463627403321No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12710.2834257272958376No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11890.26514019650255777No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11360.2533214997703159No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8100.18062536515313016No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG7200.16055588013611571No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT7170.15988689730221523No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6890.15364305751914406No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6850.15275108040727675No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6820.15208209757337626No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6660.14851418912590703No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6070.1353575267258642No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5760.12844470410889255No Hit
GATGCAGCTTCCAACTCTGCAAACCGTCAGG5320.11863295587835217No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4940.11015917331561273No Hit
GACGCCGCGTCTTCTTCTTCCGCGGGTCAGT4910.10949019048171224No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4750.10592228203424299No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)