FastQCFastQC Report
Sun 21 May 2023
EGAF00007959152

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959152
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422944
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16810.39745214496481807No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11060.261500340470606No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10410.24613187561473862No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9220.2179957630324582No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7950.1879681470833018No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6470.15297533479609593No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6410.15155670727093895No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT6190.14635507301202996No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5540.1309866081561625No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5500.13004085647272454No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5450.12885866686842704No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4980.11774608458803057No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4880.11538170537943558No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4850.11467239161685708No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4670.11041650904138609No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4330.10237761973216311No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4280.10119543012786564No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)