FastQCFastQC Report
Sun 21 May 2023
EGAF00007959154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519563
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19670.37858738978718653No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16920.325658293604433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15660.30140714408069863No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13950.2684948697270591No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9460.18207609086867232No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9150.17610953820807101No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9050.17418484380142543No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9040.17399237436076087No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7710.14839393875237458No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7250.1395403444818049No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5550.10682053956882996No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5370.10335608963686792No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5340.10277868131487423No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5250.10104645634889321No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)