FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519563
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41090.7908569316906708No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19630.3778175120245283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18340.3529889541788003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15920.3064113495379771No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10010.19266191010522304No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9350.17995892702136218No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8840.17014298554746968No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8420.16205926903955825No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7620.14666171378639356No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6450.12414278922864021No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6260.1204858698560136No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5730.11028498950079202No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5660.1089377034161401No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.10027657858623497No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)