FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494493
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18710.37836733785918103No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC15580.31507018299551254No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14610.29545413180773034No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC12940.2616821673916516No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9090.18382464463602113No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9050.18301573530868992No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8940.18079123465852906No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8680.17553332403087607No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7000.14155913228296457No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5860.11850521645402462No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5540.11203394183537482No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5230.10576489454855781No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5120.10354039389839695No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)