FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494493
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41410.8374233811196518No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37670.7617903590141822No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19780.40000566236529134No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16550.3346862341832948No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14580.29484744981223193No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9550.19312710190033025No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8990.18180237131769306No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7600.15369277219293298No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6220.12578540040000566No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5870.11870744378585743No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5700.11526957914469972No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5580.11284285116270605No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5440.11001166851704676No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)