FastQCFastQC Report
Wed 31 May 2023
EGAF00007959159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522936
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA41430.7922575611547111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20180.3858980831306316No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA17970.3436366974161274No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16170.3092156592776171No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10020.1916104456377071No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9830.18797711383419768No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9310.17803325837196138No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8210.15699817950953845No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7350.1405525723989169No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6290.12028240549512752No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6200.11856135358820201No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5900.11282451389845029No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5780.11052977802254961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)