FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959168

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959168
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433616
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG38100.8786576141101805No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT30670.7073078484188775No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT22730.5241965241135014No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA15360.3542304712003247No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT15340.3537692336076159No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT13150.30326371720600714No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG10290.23730674144865505No Hit
GTCAGTGCCGAAGGACTGACGCAGCTTGGTGCGAACCTGGTTTG10180.23476993468875684No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA9210.2123999114423822No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG8310.19164421977048818No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT7770.17919080476735175No Hit
CAGGGTCGGAATCTGATGACGGGTTTTGCATGCAACACCGTTCT7590.17503966643297295No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT7340.16927419652411352No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7020.16189439504077338No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6800.1568207815209771No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6340.1462123168886757No Hit
CACATCTGCGCTCGCAGAGATGCCAGCGAAGTAACCGGTTGCAT6280.14482860411054943No Hit
TTTAACGTTAGAGGTGAATACGCCACCGAAGCGTGGACCCAGAC6280.14482860411054943No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6060.1397549905907531No Hit
CACAGCCGGCGGACCGGTATCAGACGGAGAGACGGTCGGTGGCG6050.13952437179439872No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT5560.1282240507730342No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5550.12799343197667984No Hit
ATCCTTCAGCTCCAGAACTTCCAGCTGCGCATTTTTCAGACGGT5360.12361167484594665No Hit
GCCAGCGGTGTTCAGAGAACGGCGTTCTTTTGCGACGCTAGAGT5310.12245858086417476No Hit
GTTCAGGCCACGGATCTGACCGCGCATTTTTTCGCTAATGGACA5280.12176672447511162No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5110.1178462049370872No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5080.11715434854802406No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4990.11507877938083466No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT4930.11369506660270838No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4830.11138887863916459No Hit
ATCCTTCATCAGCAGTTCTTCGGAAAACAGGGCATCATACGGCA4780.11023578465739273No Hit
CGGGGCGACTTCACGTTGAGCAGTCTGTACGTTGCCACGCAGTT4700.10839083428655769No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4590.10585402752665952No Hit
GTAGAAACCCGGGCCCTTGCCTTTGTGGCCGCAAAAGTCACAAA4580.10562340873030515No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGATTT4540.10470093354488763No Hit
GTAGCCAGAACCATCGGAACCGGTAACCGGAGCTGCTTTGGAGC4520.1042396959521789No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)