FastQCFastQC Report
Wed 31 May 2023
EGAF00007959169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433616
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGAAGTGATTGACGTTGAAACCACTGAAG37290.8599774916054758No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT31990.7377495295376555No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA23590.5440297405999778No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA16740.3860558650972289No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC15520.3579203719419948No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG14310.33001549758311505No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12330.2843529759049482No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10740.24768458728460205No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA10260.2366148850595919No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG9700.2237002324637467No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC9040.2084793919043578No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT8190.18887679421423562No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8000.18449503708350246No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG7830.18057451754547804No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7780.17942142356370613No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC7710.17780709198922548No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7640.17619276041474483No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7480.1725028596730748No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA7210.1662761521715066No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG6970.16074130105900153No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6900.15912696948452087No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6660.1535921183720158No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6500.14990221763034575No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6430.1482878860558651No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6300.14528984170325818No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG6240.14390612892513194No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5870.13537323346001992No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5540.12776281318032545No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5500.12684033799490793No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5480.12637910040219918No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5460.12591786280949044No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5390.12430353123500978No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC5080.11715434854802406No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5050.11646249215896093No Hit
CTGTCCGGTCAGCAGTTCCTGAAATGTCCAC4960.11438692299177151No Hit
AGCAAACGTGTGAACGATGGTAACCACCACT4850.11185011623187335No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4810.11092764104645586No Hit
GGTGTTCCGGCGTCTACCTGGGCCGCAATCA4560.10516217113759639No Hit
TCTGGCGACGGTGGTGTTTCCGGTTTCGGTA4490.10354783956311575No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT4350.10031917641415446No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)