FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412102
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37410.9077849658579672No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG34490.8369287215301067No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT30080.7299163799253583No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA22270.5404001921854298No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA15750.38218693430267264No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC14090.34190564471902585No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13350.3239489252660749No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10930.2652255994875055No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10910.26474028274553385No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA9710.235621278227235No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8570.2079582239348511No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8220.19946518095034727No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT8070.1958253053855599No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC8050.19533998864358823No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7510.18223643661035374No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG7200.1747140271097932No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA7070.1715594682869775No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7040.17083149317402002No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG6990.1696182013190909No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6890.16719161760923265No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC6790.1647650338993744No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6440.1562719909148706No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA6120.14850692304332422No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6030.1463229977044518No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG5870.1424404637686786No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5490.13321944567121732No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5410.13127817870333072No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG5400.1310355203323449No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5390.13079286196135909No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5140.12472640268671349No Hit
CTGTCCGGTCAGCAGTTCCTGAAATGTCCAC5120.12424108594474184No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4960.12035855200896864No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4730.11477740947629471No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA4590.11138019228249317No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4470.10846829183066328No Hit
GGTGTTCCGGCGTCTACCTGGGCCGCAATCA4430.10749765834672No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC4360.10579904974981921No Hit
CAGATCGTGATCAAAATTACCGATCAGGGTT4240.10288714929798932No Hit
AGCAAACGTGTGAACGATGGTAACCACCACT4240.10288714929798932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)