FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959173

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959173
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414069
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36850.8899482936418809No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG35080.8472017948699371No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29380.7095435784857113No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA21780.5259992899734102No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA15330.37022815038073364No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC14640.35356426102895894No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG13950.3369003716771843No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11250.27169384812676145No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT10370.2504413515621793No Hit
AACACTTCTAGCGGTCAGACCCAATCTACCA9520.22991337192593506No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8740.21107593178914624No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7860.18982343522456402No Hit
CTGGTGGACTACCAGGATAAGATGATCAAAG7710.1862008505828739No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT7450.17992170387061093No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC7400.1787141756567142No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7160.17291804023000998No Hit
GGTCGTAAAGTACGCGGTGTCATTCCGACTG7120.1719520176588926No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC6950.16784642173164377No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA6670.16108426373382215No Hit
GTGGAAGCGTGGATCCCGCGCGCTCCGCGTG6580.15891071294880804No Hit
ATGGGTGTTGACATGGTCGAAATCGACCTGA6550.15818619602047002No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6550.15818619602047002No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6410.1548051170215592No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG6230.150458015451531No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG5920.1429713405253714No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5680.13717520509866712No Hit
GGTTACCAGAAACTGCGTCATAACATCGACA5480.13234509224308028No Hit
TCCTGCGATCGTTGCTGTCCGGGCTACCACC5360.12944702452972814No Hit
CTGTCCGGTCAGCAGTTCCTGAAATGTCCAC5220.12606594553081732No Hit
GAAGTTCACACCATGGTTGTACAGCACAACA5120.12365088910302388No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4890.11809625931909898No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG4730.11423216903462949No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4720.11399066339185014No Hit
CTGGACAGCCTGCGCATGGAGATGGAACGTC4570.11036807875016001No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA4510.10891904489348395No Hit
AGCAAACGTGTGAACGATGGTAACCACCACT4420.10674549410846984No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4310.10408893203789707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)