FastQCFastQC Report
Sun 21 May 2023
EGAF00007959177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences360991
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT43641.208894404569643No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31540.8737059926701775No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG22020.6099875066137384No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG18080.5008435113340776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17690.4900399178926898No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15130.4191240224825549No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10900.3019465859259649No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10230.28338656642409366No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9690.2684277447360183No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8900.246543542636797No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8710.2412802535243261No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7020.19446468194497923No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6640.18393810372003733No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6620.18338407328714568No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.18255302763780815No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.18005989068979558No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6330.17535063201021633No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6300.1745195863608788No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6140.17008734289774538No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5810.16094584075503268No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5740.1590067342399118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4830.1337983495433404No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4710.13047416694599034No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4430.12271774088550684No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4400.12188669523616932No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4390.1216096800197235No Hit
AACCGTGACCCGGTGGAAGCAGCTAACCCGT4100.11357623874279416No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3990.11052907136188991No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3930.10886698006321487No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG3910.1083129496303232No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG3700.10249563008496057No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC3700.10249563008496057No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)