FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363355
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44141.2147899437189527No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31680.8718746129817947No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG22100.6082206106975272No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18240.5019884135349727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17670.48630127561200476No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15940.4386894359510672No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11040.3038350924027466No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11030.30355987945672963No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10150.2793411402072354No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9320.25649846568782597No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9300.255948039795792No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7390.20338236710654867No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7260.19980459880832796No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6860.18879608096764872No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6840.18824565507561475No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6770.1863191644534959No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6420.17668671134290156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6420.17668671134290156No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6330.17420979482874874No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC5510.15164233325535634No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5360.14751413906510163No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4670.12852444578992994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4660.12824923284391299No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4540.12494667749170922No Hit
AACCGTGACCCGGTGGAAGCAGCTAACCCGT4380.1205432703554375No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4030.1109108172448432No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC3990.10980996546077527No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG3940.10843390073069037No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG3840.10568177127052057No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC3800.10458091948645264No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG3720.1023792159183168No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG3650.10045272529619793No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)