FastQCFastQC Report
Wed 31 May 2023
EGAF00007959180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439456
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16520.375919318430059No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10970.2496268113303721No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10860.247123716595063No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG10280.2339255807179786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10150.23096737784897692No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9890.22505097211097358No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8500.19342095681934027No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7860.1788574965411782No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7220.16429403626301609No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6770.15405410325493338No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6760.15382654918808708No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6680.15200611665331681No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6420.14608971091531348No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6410.14586215684846718No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6270.14267639991261924No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6210.14131107551154154No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5680.12925070996868854No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5550.12629250709968687No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5370.12219653389645381No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4950.11263926308890994No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4920.11195660088837109No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4750.10808818175198427No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4630.10535753294982889No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4520.10285443821451978No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4480.10194422194713465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)