FastQCFastQC Report
Wed 31 May 2023
EGAF00007959181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences439456
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37710.858106386077332No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16610.3779673050316755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12680.2885385567610864No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11810.2687413529454598No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11670.26555559600961187No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11270.25645343333576054No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10840.2466686084613704No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10750.24462062185975386No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10180.23165004004951578No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.20730175489696354No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7860.1788574965411782No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7420.16884511759994175No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7190.16361137406247725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7080.16110827932716815No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7060.16065317119347558No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6850.15587453578970362No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6620.15064079225223914No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6560.14927546785116144No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6170.1404008592441564No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5610.1276578315007646No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5580.12697516930022573No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5330.12128631762906866No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5020.11423214155683391No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.11354947935629506No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT4850.11036372242044709No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4760.10831573581883056No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)