FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959183

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959183
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483016
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29980.6206833728075261No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15460.32007221292876425No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11380.2356029613925833No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9310.19274723818672673No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8990.1861221988505557No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8250.1708017953856601No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8230.17038773042714941No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7800.16148533381916955No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7040.1457508653957633No Hit
AAAGTTCCGGTGACCATGACCCGTTACCGCT6870.1422313132484224No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6480.13415704655746394No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6210.12856716961756962No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6070.12566871490799478No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5890.12194213028139855No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5840.12090696788512181No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5810.12028587044735578No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5640.11676631830001491No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5260.10889908408831177No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5200.10765688921277969No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4880.10103184987660864No Hit

[OK]Adapter Content

Adapter graph