FastQCFastQC Report
Wed 31 May 2023
EGAF00007959185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446676
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66331.4849689707976252No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12920.2892476873617566No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9400.2104433638700087No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8220.1840260054267523No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8170.18290662583169906No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7990.1788768592895074No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7460.16701143558194306No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6870.15380275636031485No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6650.14887748614208063No Hit
AAAGTTCCGGTGACCATGACCCGTTACCGCT6280.14059407713868666No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5950.1332061718113353No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5700.1276092738360691No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5660.1267137701600265No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5610.12559439056497326No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5200.11641547788553673No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4900.1096992003152173No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4850.10857982072016406No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC4800.10746044112511081No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC4630.10365455050192982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)