FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959187

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959187
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420213
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27820.6620452008862172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27030.6432452113570974No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24890.592318657442773No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG19970.47523517835002727No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19040.4531035451068863No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17300.41169597323262247No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17290.411457998681621No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15400.3664808085423345No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15020.35743777560427686No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC14090.33530614236113593No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12770.3038935016289358No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG12540.29842008695590094No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12530.2981821124048994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11650.27724035191676605No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9590.22821759441045375No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8720.20751380847332185No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8670.2063239357183143No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8280.19704292822925515No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7090.16872395666007478No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6450.15349358539597777No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.14802017072294288No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6040.14373662880491558No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6000.14278473060090954No Hit
GCGAAAACTGCGGCGGCCAAACCGGCTGCCA5800.13802523958087923No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5590.1330277740098474No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5570.13255182490784437No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA5260.12517461382679737No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4510.10732652250168366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4370.10399487878766246No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4330.10304298058365638No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)