FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959191

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959191
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495863
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53221.0732803213790907No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29290.590687347109988No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG29270.5902840098978952No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26050.5253467187509453No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC16760.3379965837338136No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15530.31319134519010294No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15120.30492293234219936No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15000.3025029090696422No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13920.280722699616628No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13810.2785043449501173No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13570.273664298405003No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13410.2704376007082602No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12190.2458340307705959No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12180.24563236216454948No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11900.23998564119524948No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11700.23595226907432093No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11090.22365048410548882No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9430.19017349550178175No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA9050.18251008847201747No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8280.1669816058064425No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8010.16153655344318896No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7260.14641140798970684No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6120.12342118690041401No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6080.1226145124762283No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5950.11999282059762474No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5680.1145477682343712No Hit
TACCAGGTTGGCATCGACGGCTCTAACCTGG5340.10769103562879263No Hit
CCGTGGCCGGGCCCAGCAGATAACCGCATTC5330.1074893670227462No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5090.10264932047763192No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5000.10083430302321407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)