FastQCFastQC Report
Sun 21 May 2023
EGAF00007959193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466176
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66351.4232821938495333No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC15430.33099087040087866No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14200.30460598572213066No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13110.2812242586490939No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12410.2662084706205382No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10500.2252368204283361No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8990.19284562053816584No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8060.1728960735859418No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA7790.16710426963207028No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6880.14758374519494782No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5540.11883923668314113No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5530.11862472542559033No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5010.10747014003294894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)