FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959195

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959195
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504726
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31010.6143927596359212No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC17210.3409770845963949No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15720.31145611678415613No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14960.2963984419269069No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14520.2876808406937626No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11960.23696025170092286No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC10050.1991179372570464No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9980.19773104615177345No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9660.19139097252766848No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7680.15216176697851905No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6080.12046139885799423No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6010.11907450775272127No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5560.1101587792188237No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5310.10520559669999169No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5220.10342245099321215No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)