FastQCFastQC Report
Wed 31 May 2023
EGAF00007959197

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959197
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470868
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69051.4664407010032536No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16250.3451073336901212No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14370.3051810698539718No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT13300.28245707926637614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12700.2697146546378178No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10620.2255409159254823No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9130.1938972280978958No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9030.19177349065980276No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8220.17457121741124904No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.134220206087481No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5580.11850454904559239No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5300.11255808421893185No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5120.10873535683036434No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4980.10576212441703407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)