FastQCFastQC Report
Wed 31 May 2023
EGAF00007959198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510529
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13010.2548337116990416No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10580.20723602381059647No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9570.1874526226717777No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8810.1725661030029636No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6690.13104054813732421No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6610.12947354606692274No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6490.12712304296132051No Hit
GACGGAGCCGGACTGGGTGAAATCGATGTTGTCGTCACCCTTCA5950.11654577898611049No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5930.11615402846851013No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5550.10871076863410306No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5510.10792726759890231No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5470.10714376656370157No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)