FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515151
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG13030.2529355470531941No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11380.22090610325904442No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11060.21469433234139115No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9100.17664723547076489No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7340.14248249542367192No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7230.14034719917072858No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6130.11899423664129546No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6000.11647070470599881No Hit
GACGGAGCCGGACTGGGTGAAATCGATGTTGTCGTCACCCTTCA5860.11375305492952552No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5670.1100648159471689No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5470.1061824591236356No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5420.10521186991775226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)