FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499333
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG21220.4249669058524071No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19200.3845129402623099No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16450.32943947225598946No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15960.31962638159304513No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15380.30801088652262115No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14750.29539405567026417No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13860.27757027875185497No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13430.2689587910272303No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA12860.25754356311319304No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12300.2463286023555423No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG12080.24192272491503664No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11970.23971978619478385No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10410.20847810979847115No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9510.19045406572367538No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9460.18945272994174228No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8300.16622173980089439No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7540.1510014359155113No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7400.14819769572609862No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6720.13457952909180845No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6670.13357819330987536No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6550.13117498743323594No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6370.12757017861827677No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6350.12716964430550354No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT6270.12556750705441058No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6130.1227637668649979No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5850.11715628648617256No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT5810.11635521786062608No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5570.1115488061073472No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5540.11094800463818733No Hit
ACCGCCCAGAGAATCAGCGATCAGATGGGAACGGTCGAACAGGT5360.10734319582322818No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5130.10273705122633592No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5070.10153544828801621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)