FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499333
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30740.6156212387324691No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23460.46982674888300996No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG21040.421362097037448No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20950.4195596926299684No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19480.3901204206411353No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18270.36588809471835426No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC18170.3638854231544881No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17180.34405897467221275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14910.2985983301724501No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG14610.29259031548085146No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC13600.2723633326858029No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13590.2721630655294162No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13260.2655542493686578No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT13200.26435264643033807No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG12560.2515355484215944No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9710.19445940885140778No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9420.1886516613161958No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8790.17603483046383875No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8210.16441933539341483No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7790.1560081148251768No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7400.14819769572609862No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7110.14238994819088666No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6920.13858487221954086No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6760.13538059771735494No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6590.1319760560587824No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6500.13017365165130285No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5940.11895869089365214No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5900.11815762226810565No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5760.11535388207869297No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5440.10894533307432115No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC5300.10614159288490847No Hit
GGCTCCGCGCAAGAACAGTCTCGCGATGGCA5270.1055407914157486No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5170.10353811985188241No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5150.10313758553910916No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5100.10213624975717607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)