FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959204

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959204
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458636
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG19720.429970608499987No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18180.39639278207554574No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16420.3580181233047558No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14800.32269599420891515No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG14400.3139744808519174No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13000.2834491841024254No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG12510.27276533024010324No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11560.25205173601723374No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11240.24507452533163557No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA10700.23330048229968864No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10500.2289397256211898No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10490.22872168778726487No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10210.22261662843736646No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9150.19950461804132255No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG8700.1896929155147001No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7820.17050558612930516No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG6780.14782965140111112No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG6570.14325085688868733No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6500.1417245920512127No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6070.1323489651924402No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6050.13191288952459032No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG5730.12493567883899213No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG5660.12340941400151755No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5530.12057492216049329No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5510.1201388464926434No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5490.11970277082479351No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5400.11774043031946904No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT5160.1125075223052704No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5000.10901891696247132No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT4800.10465816028397247No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4790.10444012245004754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)