FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458636
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65511.4283658500422993No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21900.4775028562956244No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG20350.4437069920372583No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19600.4273541544928876No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17110.37306273384557687No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16680.36368710698680434No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16040.34973268561560805No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14600.31833523753041626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13150.2867197516112996No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG12950.28235899493280076No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC12620.2751637464132776No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG11720.2555403413600328No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11610.2531419251868584No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11410.24878116850835957No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT11160.24333022266023602No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9260.20190303421449687No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9140.19928658020739756No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC8300.1809714021577024No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8080.17617456981135368No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6760.14739357573326123No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG6330.1380179488744887No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG6230.1358375705352393No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6080.13256700302636512No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5830.12711605717824156No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG5810.12667998151039167No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5720.1247176410050672No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5480.11948473299086858No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5360.11686827898376928No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5190.11316163580704525No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5020.10945499263032121No Hit
GGCTCCGCGCAAGAACAGTCTCGCGATGGCA4880.106402462955372No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4850.10574834945359719No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4820.10509423595182237No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA4740.10334993328042281No Hit
CTGGAAGAGGTCATCGTAGAAAAAACCAAAC4620.1007334792733235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)