FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959207

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959207
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522495
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT84071.6090106125417467No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG32060.6135943884630475No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG29010.555220624120805No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG21880.4187599881338578No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG20360.3896688006583795No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18940.36249150709576167No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18620.3563670465746084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18600.3559842677920363No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC18380.3517737011837434No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG16730.32019445162154664No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG16070.3075627517966679No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG15800.3023952382319448No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14600.27942851127761986No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13030.24938037684571146No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11380.2178011272835147No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11360.2174183485009426No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT11060.21167666676236135No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11000.2105283304146451No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG10980.21014555163207305No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC10080.19292050641632935No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9930.19004966554703873No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9720.18603048833003186No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9560.18296825806945521No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9060.17339878850515317No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG8660.16574321285371152No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8630.16516904467985338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8580.16421209772342318No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG8530.16325515076699298No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG8150.15598235389812343No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7900.1511976191159724No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7880.15081484033340034No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7850.1502406721595422No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7650.14641288433382138No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7340.1404798132039541No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7290.1395228662475239No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7080.13550368903051702No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6330.12114948468406395No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6200.11866142259734543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6060.11598197111934085No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5920.11330251964133628No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5620.10756083790275504No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5600.10717805912018297No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5500.10526416520732255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)