FastQCFastQC Report
Sun 21 May 2023
EGAF00007959212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475825
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15980.33583775547732886No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15300.32154678715914464No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG13340.2803551725949666No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12440.26144065570325226No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12290.25828823622129987No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10460.21982871854148062No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10220.21478484737035677No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10090.21205275048599798No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10050.2112121052908107No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9200.19334839489308042No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8780.18452162034361372No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8070.16960016812903903No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7090.14900436084695004No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7020.14753323175537225No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6760.14206903798665477No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6710.14101823149267062No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6480.1361845216203436No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6180.12987968265643882No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5880.12357484369253402No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5770.12126306940576893No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5720.1202122629117848No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5610.11790048862501971No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5500.1155887143382546No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5290.11117532706352125No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4910.10318919770924186No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4860.10213839121525771No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4810.10108758472127358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)