FastQCFastQC Report
Wed 31 May 2023
EGAF00007959213

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959213
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences475825
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29350.616823411968686No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23980.5039667945147901No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22150.46550727683497084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15930.3347869489833447No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG13620.28623968896127777No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12530.2633321073924237No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11420.24000420322597593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10980.23075710607891559No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10960.23033678348132192No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9820.2063783954184837No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9580.20133452424735987No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9020.18956549151473756No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8500.17863710397730256No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7970.1674985551410708No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7950.16707823254347712No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7780.16350549046393106No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7730.16245468396994694No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7450.1565701676036358No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7350.15446855461566752No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7280.15299742552408974No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6860.14417065097462303No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6320.1328219408395944No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6260.1315609730468134No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5870.1233646823937372No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5770.12126306940576893No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5530.11621919823464509No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5460.11474806914306732No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5440.11432774654547365No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5120.1076025849839752No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4870.10234855251405454No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4860.10213839121525771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)