FastQCFastQC Report
Sun 21 May 2023
EGAF00007959214

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959214
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436956
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15130.34625911991138697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14660.3355028881626525No Hit
GCGCAGACCCGGGAAACGGTCACGTGCCGCCTGCAGTGCGCGAG11690.2675326577504371No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11530.2638709618359743No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11220.2567764260017027No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9470.21672662693726596No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9120.20871666712437864No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9050.2071146751618012No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8840.20230869927406878No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8220.1881196276055255No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7390.16912458004924982No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7250.16592059612409488No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6860.15699521233259184No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6330.14486584461593385No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6210.1421195726800868No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5980.13685588480304653No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5800.1327364768992759No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5560.12724393302758175No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5420.12403994910242677No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5370.12289566912915717No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5240.11992054119865617No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4950.11328371735369236No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4850.11099515740715313No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4810.11007973342853743No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4710.1077911734819982No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4650.10641803751407465No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG4610.10550261353545895No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG4560.10435833356218932No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4520.10344290958357363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)