FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959215

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959215
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436956
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59261.3562006243191533No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23540.5387270114153371No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20700.4737319089336226No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15330.35083623980446543No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG11980.2741694815954009No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11740.26867693772370677No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9960.22794057067530826No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9750.22313459478757589No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9750.22313459478757589No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9000.20597039518853158No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8760.2004778513168374No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8080.18491564368037056No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7770.17782110784609892No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7720.1766768278728293No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7190.16454746015617133No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6610.15127381246624375No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6520.14921410851435843No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6490.14852754053039666No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6350.1453235566052417No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6240.14280614066404856No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5900.13502503684581516No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5760.13182105292066018No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5740.13136334093135235No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5510.12609965305431212No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5200.11900511722004047No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5130.11740312525746299No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5040.11534342130557769No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4990.11419914133230806No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4700.10756231748734427No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4650.10641803751407465No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4500.10298519759426579No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG4470.10229862961030402No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4430.10138320563168832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)