FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007959217

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959217
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462952
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29130.629222899998272No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8330.17993226079593563No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7030.1518515958457896No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5670.12247490020563688No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5210.1125386649155852No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5000.10800255750056162No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)