FastQCFastQC Report
Wed 31 May 2023
EGAF00007959219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466074
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30010.6438891678145531No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.18452005475525346No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6900.14804516021061032No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5420.11629054613645044No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4900.1051335195698537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4780.10255882113140832No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)