FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959220

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959220
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488712
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG17680.36176725760775263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14940.30570151745813484No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11480.23490317405752262No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11020.22549067753605392No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10510.21505508356659953No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9730.1990947633780222No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9080.1857944965542078No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8950.1831344431894449No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8560.17515428309515627No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8460.1731080881991848No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8130.166355645042479No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7940.16246787474013324No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7760.15878472392738463No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7600.1555108120938303No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7450.15244151974987313No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6680.13668581905089297No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.12972875640459003No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5910.1209301183519128No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5860.11990702090392705No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG5230.10701599305930692No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5130.10496979816333545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)