FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959222

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959222
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448474
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15720.3505219923563016No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13130.2927705953968346No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10050.22409325847206307No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10040.22387028010542415No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG9760.21762688583953585No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9180.20469414057448146No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG8010.17860567167773383No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7910.17637588801134513No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7740.17258525577848435No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7580.16901760191226248No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6850.15274018114762505No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6830.1522942244143473No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6730.15006444074795863No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6620.14761167871493108No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6240.13913850078265405No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5670.12642873388423856No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5510.12286108001801664No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5130.11438790208573964No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4960.11059726985287888No Hit
GCGGGTGTTGTTGCGAGCACGACCACGACGACCGCCCGGCGGCG4690.10457685395362942No Hit

[OK]Adapter Content

Adapter graph