FastQCFastQC Report
Sun 21 May 2023
EGAF00007959223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448474
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61361.3681952576960983No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19230.4287873990465445No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15520.3460624250235242No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14050.3132846051276105No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13820.30815610269491656No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13670.3048114271953335No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10920.24349237636964463No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG9590.21383625360667508No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8170.1821733255439557No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC8170.1821733255439557No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7940.17704482311126174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7650.17057845047873454No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.1587605970468745No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7000.1560848566472081No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6840.15251720278098618No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6680.1489495489147643No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6240.13913850078265405No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5890.13133425795029366No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5620.1253138420510442No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5200.11594875065221173No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4970.11082024821951775No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4640.10346196212043508No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4560.10167813518732413No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4520.10078622172076865No Hit

[OK]Adapter Content

Adapter graph