FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493508
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31030.6287638700892386No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20540.4162039926404435No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG17910.36291205005795246No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15440.3128622028416966No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15290.3098227384358511No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15270.3094174765150717No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG13170.26686497483323474No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10560.2139782941715231No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9190.18621785259813417No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8980.1819626024299505No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8950.18135470954878138No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8860.17953103090527406No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8050.16311792311370837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7930.160686351589032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7160.1450837676390251No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7130.144475874757856No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7100.1438679818766869No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6780.1373837911442165No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6750.13677589826304742No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6020.12198383815459932No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5770.11691806414485682No Hit
GCACCGCCGCGTCCGGTGTGCGAAATCAAAC5160.10455757556108512No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5090.10313915883835723No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5080.10293652787796753No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5040.10212600403640873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)