FastQCFastQC Report
Wed 31 May 2023
EGAF00007959226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575899
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9040.15697196904318292No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6830.11859718457576762No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG6620.11495071184356981No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6150.1067895585857937No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)