FastQCFastQC Report
Wed 31 May 2023
EGAF00007959227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences575899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13380.2323324055086048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13040.22642859251361785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10870.1887483742809069No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.16634861321169164No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7630.13248850926985462No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7110.12345914821869806No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6940.12050724172120458No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA6750.11720805210635893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)