FastQCFastQC Report
Wed 31 May 2023
EGAF00007959229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550389
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55601.0101946078137463No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12730.23129095966670843No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10410.18913895444858092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8930.16224888215425817No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7040.12790953307569738No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6990.12700108468737564No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6430.11682646273817245No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5950.10810535821028398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)