FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007959231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578947
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14670.25339107033977204No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13740.23732742375381513No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10150.17531829338436852No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10090.17428192908850032No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7300.12609098933062957No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6940.11987280355542043No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6890.11900916664219696No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA6120.10570915817855521No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6010.10380915696946354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)