FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007959233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007959233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517243
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24390.4715385225126294No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23180.44814526247817754No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20870.40348540241240577No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15070.29135242042908266No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14770.28555243860235907No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14410.2785924604102907No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13760.26602583311905625No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11940.23083927670359966No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11480.2219459712359568No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10470.20241936575265398No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9980.19294606210233875No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA9780.18907940755118968No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA9560.1848260875449257No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9160.17709277844262755No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8890.1718727947985763No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8390.16220615842070363No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7680.1484795347641244No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7610.14712620567122223No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7510.14519287839564768No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7250.14016622747915392No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7050.13629957292800482No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6820.13185292019418338No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6700.12953292746349396No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6400.12373294563677033No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5960.11522630562424238No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5250.10149968196766317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)